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LOC109528296 histone deacetylase 4-like [ Hippocampus comes (tiger tail seahorse) ]

Gene ID: 109528296, updated on 25-Jan-2024

Summary

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Gene symbol
LOC109528296
Gene description
histone deacetylase 4-like
See related
Ensembl:ENSHCOG00000005745
Gene type
protein coding
RefSeq status
MODEL
Organism
Hippocampus comes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Syngnathiaria; Syngnathiformes; Syngnathoidei; Syngnathidae; Hippocampus
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Genomic context

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Location:
chromosome: Un
Exon count:
27
Annotation release Status Assembly Chr Location
100 current H_comes_QL1_v1 (GCF_001891065.1) Unplaced Scaffold NW_017805983.1 (2877727..2933902, complement)

NW_017805983.1Genomic Context describing neighboring genes Neighboring gene thymosin beta-12 Neighboring gene phosphoribosyl pyrophosphate synthetase 2 Neighboring gene angio-associated, migratory cell protein Neighboring gene G protein-coupled bile acid receptor 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_017805983.1 Unplaced Scaffold Reference H_comes_QL1_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone deacetylase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone deacetylase 4-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Hippocampus comes Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference H_comes_QL1_v1 Primary Assembly

Genomic

  1. NW_017805983.1 Reference H_comes_QL1_v1 Primary Assembly

    Range
    2877727..2933902 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019890680.1 → XP_019746239.1  histone deacetylase 4-like isoform X3

    UniProtKB/TrEMBL
    A0A3Q3D6Q9
    Conserved Domains (3) summary
    cd10162
    Location:103 → 164
    ClassIIa_HDAC4_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC4, a Class IIa histone deacetylase
    cl17011
    Location:654 → 1056
    Arginase_HDAC; Arginase-like and histone-like hydrolases
    cl26927
    Location:43 → 189
    Activator_LAG-3; Transcriptional activator LAG-3

  2. XM_019890678.1 → XP_019746237.1  histone deacetylase 4-like isoform X1

    UniProtKB/TrEMBL
    A0A3Q3D6Q9
    Conserved Domains (3) summary
    cd10162
    Location:110 → 171
    ClassIIa_HDAC4_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC4, a Class IIa histone deacetylase
    cl17011
    Location:661 → 1063
    Arginase_HDAC; Arginase-like and histone-like hydrolases
    cl26927
    Location:50 → 196
    Activator_LAG-3; Transcriptional activator LAG-3

  3. XM_019890679.1 → XP_019746238.1  histone deacetylase 4-like isoform X2

    UniProtKB/TrEMBL
    A0A3Q3D6Q9
    Related
    ENSHCOP00000004289.1, ENSHCOT00000007296.1
    Conserved Domains (3) summary
    cd10162
    Location:110 → 171
    ClassIIa_HDAC4_Gln-rich-N; Glutamine-rich N-terminal helical domain of HDAC4, a Class IIa histone deacetylase
    cl17011
    Location:660 → 1062
    Arginase_HDAC; Arginase-like and histone-like hydrolases
    cl26927
    Location:50 → 196
    Activator_LAG-3; Transcriptional activator LAG-3
Nucleotide Protein
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