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LOC109228286 ethylene-responsive transcription factor SHINE 2-like [ Nicotiana attenuata ]

Gene ID: 109228286, updated on 21-Dec-2023

Summary

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Gene symbol
LOC109228286
Gene description
ethylene-responsive transcription factor SHINE 2-like
Locus tag
A4A49_08959
Gene type
protein coding
RefSeq status
MODEL
Organism
Nicotiana attenuata
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Also known as
RAP2-11_6
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Genomic context

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Location:
chromosome: 6
Exon count:
1
Annotation release Status Assembly Chr Location
100 current NIATTr2 (GCF_001879085.1) 6 NC_031994.1 (63045130..63045944, complement)

Chromosome 6 - NC_031994.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 4E-1-like Neighboring gene uncharacterized LOC109227894 Neighboring gene uncharacterized LOC109227896 Neighboring gene calcium sensing receptor, chloroplastic

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_031994.1 Chromosome 6 Reference NIATTr2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Molecular evolution and diversification of the Argonaute family of proteins in plants. Singh RK, et al. BMC Plant Biol, 2015 Jan 28. PMID 25626325, Free PMC Article
  2. Cytokinin levels and signaling respond to wounding and the perception of herbivore elicitors in Nicotiana attenuata. Schäfer M, et al. J Integr Plant Biol, 2015 Feb. PMID 24924599, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ethylene-responsive transcription factor SHINE 2-like
Names
ethylene-responsive transcription factor rap2-11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nicotiana attenuata Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NIATTr2

Genomic

  1. NC_031994.1 Reference NIATTr2

    Range
    63045130..63045944 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019393440.1 → XP_019248985.1  ethylene-responsive transcription factor SHINE 2-like

    UniProtKB/TrEMBL
    A0A1J6IBE3
Nucleotide Protein
Heading Accession and Version

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