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Trip11 thyroid hormone receptor interactor 11 [ Mus musculus (house mouse) ]

Gene ID: 109181, updated on 5-Aug-2018

Summary

Official Symbol
Trip11provided by MGI
Official Full Name
thyroid hormone receptor interactor 11provided by MGI
Primary source
MGI:MGI:1924393
See related
Ensembl:ENSMUSG00000021188 Vega:OTTMUSG00000039943
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
TRIP230; AI450776; GMAP-210; 2610511G22Rik; 3110031G15Rik; 6030460N08Rik
Expression
Ubiquitous expression in bladder adult (RPKM 5.0), cerebellum adult (RPKM 3.6) and 28 other tissues See more
Orthologs

Genomic context

See Trip11 in Genome Data Viewer
Location:
12; 12 E
Exon count:
21
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 12 NC_000078.6 (101834043..101913171, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 12 NC_000078.5 (103075582..103151381, complement)

Chromosome 12 - NC_000078.6Genomic Context describing neighboring genes Neighboring gene tandem C2 domains, nuclear Neighboring gene fibulin 5 Neighboring gene predicted gene, 20036 Neighboring gene ataxin 3 Neighboring gene uncharacterized LOC102631912 Neighboring gene cleavage and polyadenylation specific factor 2

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC189992

Gene Ontology Provided by MGI

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
Golgi organization IMP
Inferred from Mutant Phenotype
more info
PubMed 
bone development IMP
Inferred from Mutant Phenotype
more info
PubMed 
chondrocyte differentiation involved in endochondral bone morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
inner ear receptor cell stereocilium organization IMP
Inferred from Mutant Phenotype
more info
PubMed 
protein glycosylation IMP
Inferred from Mutant Phenotype
more info
PubMed 
ventricular septum development IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
Golgi apparatus ISO
Inferred from Sequence Orthology
more info
 
acrosomal membrane IDA
Inferred from Direct Assay
more info
PubMed 
cis-Golgi network IDA
Inferred from Direct Assay
more info
PubMed 
inner acrosomal membrane ISO
Inferred from Sequence Orthology
more info
 
nuclear speck ISO
Inferred from Sequence Orthology
more info
 
nucleus ISO
Inferred from Sequence Orthology
more info
 
outer acrosomal membrane ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
thyroid receptor-interacting protein 11

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_028446.1NP_082722.1  thyroid receptor-interacting protein 11

    Status: VALIDATED

    Source sequence(s)
    AC121965
    Consensus CDS
    CCDS49143.1
    UniProtKB/TrEMBL
    E9Q512
    Related
    ENSMUSP00000021605.7, OTTMUSP00000058012, ENSMUST00000021605.13, OTTMUST00000103784
    Conserved Domains (2) summary
    COG1196
    Location:9461768
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:2261065
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000078.6 Reference GRCm38.p4 C57BL/6J

    Range
    101834043..101913171 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011243986.1XP_011242288.1  thyroid receptor-interacting protein 11 isoform X2

    Conserved Domains (2) summary
    COG1196
    Location:8821704
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:1621001
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  2. XM_006515382.3XP_006515445.1  thyroid receptor-interacting protein 11 isoform X1

    Conserved Domains (2) summary
    COG1196
    Location:9451767
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:2251064
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  3. XM_006515383.3XP_006515446.1  thyroid receptor-interacting protein 11 isoform X3

    Conserved Domains (2) summary
    COG1196
    Location:7581577
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:2261065
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
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