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Tsp_05747 ubiquitin carboxyl- hydrolase 4 [ Trichinella spiralis ]

Gene ID: 10910392, updated on 28-Dec-2023

Summary

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Gene symbol
Tsp_05747
Gene description
ubiquitin carboxyl- hydrolase 4
Locus tag
Tsp_05747
Gene type
protein coding
RNA name
ubiquitin carboxyl- hydrolase 4
RefSeq status
PROVISIONAL
Organism
Trichinella spiralis (strain: ISS 195)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Enoplea; Trichocephalida; Trichinellidae; Trichinella
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Genomic context

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Location:
chromosome: Unknown
Exon count:
19

NW_003526941.1Genomic Context describing neighboring genes Neighboring gene U1 small nuclear ribonucleoprotein C Neighboring gene putative kallikrein-8 Neighboring gene hydroxyacylglutathione hydrolase Neighboring gene mediator of RNA polymerase II transcription subunit 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_003526941.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The draft genome of the parasitic nematode Trichinella spiralis. Mitreva M, et al. Nat Genet, 2011 Mar. PMID 21336279, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
ubiquitin carboxyl- hydrolase 4

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_003526941.1 Reference assembly

    Range
    5186440..5191865 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003379971.1 → XP_003380019.1  ubiquitin carboxyl- hydrolase 4 [Trichinella spiralis]

    See identical proteins and their annotated locations for XP_003380019.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    E5S4B4
    Conserved Domains (3) summary
    smart00695
    Location:29 → 125
    DUSP; Domain in ubiquitin-specific proteases
    COG5560
    Location:30 → 783
    UBP12; Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
    cl02553
    Location:262 → 779
    Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...
Nucleotide Protein
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