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LOC108340788 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1 [ Vigna angularis (adzuki bean) ]

Gene ID: 108340788, updated on 25-Jan-2024

Summary

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Gene symbol
LOC108340788
Gene description
histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1
Locus tag
HKW66_Vig0246790
Gene type
protein coding
RefSeq status
MODEL
Organism
Vigna angularis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Vigna
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Genomic context

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Location:
chromosome: 5
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2022_12 current ASM1680809v1 (GCF_016808095.1) 5 NC_068974.1 (19353212..19356290, complement)
100 previous assembly Vigan1.1 (GCF_001190045.1) 8 NC_030644.1 (11484315..11487327, complement)

Chromosome 5 - NC_068974.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108340391 Neighboring gene protein ZINC INDUCED FACILITATOR-LIKE 1 Neighboring gene CO(2)-response secreted protease Neighboring gene uncharacterized LOC128196668

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_016808095.1-RS_2023_1

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1680809v1 Primary Assembly

Genomic

  1. NC_068974.1 Reference ASM1680809v1 Primary Assembly

    Range
    19353212..19356290 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017578368.2 → XP_017433857.1  histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1

    UniProtKB/TrEMBL
    A0A0L9V497, A0A0S3SAL0
    Conserved Domains (2) summary
    cl40432
    Location:412 → 640
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain superfamily
    pfam02182
    Location:208 → 360
    SAD_SRA; SAD/SRA domain
Nucleotide Protein
Heading Accession and Version

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