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LOC108336017 probable carotenoid cleavage dioxygenase 4, chloroplastic [ Vigna angularis (adzuki bean) ]

Gene ID: 108336017, updated on 23-Nov-2023

Summary

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Gene symbol
LOC108336017
Gene description
probable carotenoid cleavage dioxygenase 4, chloroplastic
Locus tag
HKW66_Vig0155140
Gene type
protein coding
RefSeq status
MODEL
Organism
Vigna angularis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Vigna
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Genomic context

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Location:
chromosome: 10
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2022_12 current ASM1680809v1 (GCF_016808095.1) 10 NC_068979.1 (9657849..9660154)
100 previous assembly Vigan1.1 (GCF_001190045.1) 6 NC_030642.1 (6489587..6491628)

Chromosome 10 - NC_068979.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At1g31790 Neighboring gene uncharacterized LOC128194363 Neighboring gene probable apyrase 7 Neighboring gene WAT1-related protein At4g19185

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carotenoid dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carotene catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast stroma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable carotenoid cleavage dioxygenase 4, chloroplastic
Names
carotenoid cleavage dioxygenase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_016808095.1-RS_2023_1

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1680809v1 Primary Assembly

Genomic

  1. NC_068979.1 Reference ASM1680809v1 Primary Assembly

    Range
    9657849..9660154
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017572292.2 → XP_017427781.1  probable carotenoid cleavage dioxygenase 4, chloroplastic

    UniProtKB/TrEMBL
    A0A0L9URF4, A0A0S3T3Y8, A0A8T0JN24
    Conserved Domains (1) summary
    cl10080
    Location:54 → 583
    RPE65; Retinal pigment epithelial membrane protein
Nucleotide Protein
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