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LOC108327606 putative transcription factor bHLH086 [ Vigna angularis (adzuki bean) ]

Gene ID: 108327606, updated on 23-Nov-2023

Summary

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Gene symbol
LOC108327606
Gene description
putative transcription factor bHLH086
Locus tag
HKW66_Vig0056050
Gene type
protein coding
RefSeq status
MODEL
Organism
Vigna angularis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Vigna
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Genomic context

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Location:
chromosome: 2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2022_12 current ASM1680809v1 (GCF_016808095.1) 2 NC_068971.1 (47323065..47324856, complement)
100 previous assembly Vigan1.1 (GCF_001190045.1) 3 NC_030639.1 (35924730..35926239, complement)

Chromosome 2 - NC_068971.1Genomic Context describing neighboring genes Neighboring gene protease Do-like 7 Neighboring gene U-box domain-containing protein 4 Neighboring gene pentatricopeptide repeat-containing protein At1g77360, mitochondrial Neighboring gene probable serine/threonine-protein kinase PBL7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative transcription factor bHLH086
Names
putative transcription factor bHLH086 Basic helix-loop-helix protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_016808095.1-RS_2023_1

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1680809v1 Primary Assembly

Genomic

  1. NC_068971.1 Reference ASM1680809v1 Primary Assembly

    Range
    47323065..47324856 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017561292.2 → XP_017416781.1  putative transcription factor bHLH086

    UniProtKB/TrEMBL
    A0A0L9U8Q2, A0A0S3RZM8
    Conserved Domains (1) summary
    smart00353
    Location:249 → 297
    HLH; helix loop helix domain
Nucleotide Protein
Heading Accession and Version

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