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rab5c RAB5C, member RAS oncogene family [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108278386, updated on 13-Oct-2018

Summary

Gene symbol
rab5c
Gene description
RAB5C, member RAS oncogene family
See related
Ensembl:ENSIPUG00000020082
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs

Genomic context

See rab5c in Genome Data Viewer
Location:
chromosome: 2
Exon count:
6
Annotation release Status Assembly Chr Location
100 current IpCoco_1.2 (GCF_001660625.1) 2 NC_030417.1 (6087100..6104352, complement)

Chromosome 2 - NC_030417.1Genomic Context describing neighboring genes Neighboring gene DExH-box helicase 58 Neighboring gene lysine acetyltransferase 2A Neighboring gene potassium voltage-gated channel subfamily H member 4 Neighboring gene hypocretin neuropeptide precursor

Genomic regions, transcripts, and products

Genomic Sequence:
NC_030417.1 Chromosome 2 Reference IpCoco_1.2 Primary Assembly

Pathways from BioSystems

  • Endocytosis, organism-specific biosystem (from KEGG)
    Endocytosis, organism-specific biosystemEndocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins en...
  • Endocytosis, conserved biosystem (from KEGG)
    Endocytosis, conserved biosystemEndocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins en...
  • Phagosome, organism-specific biosystem (from KEGG)
    Phagosome, organism-specific biosystemPhagocytosis is the process of taking in relatively large particles by a cell, and is a central mechanism in the tissue remodeling, inflammation, and defense against infectious agents. A phagosome is...
  • Phagosome, conserved biosystem (from KEGG)
    Phagosome, conserved biosystemPhagocytosis is the process of taking in relatively large particles by a cell, and is a central mechanism in the tissue remodeling, inflammation, and defense against infectious agents. A phagosome is...

General protein information

Preferred Names
RAB5C, member RAS oncogene family; ras-related protein Rab-5C
Names
Ras-related protein Rab-5C

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001329319.1NP_001316248.1  RAB5C, member RAS oncogene family

    Status: PROVISIONAL

    Source sequence(s)
    KF987076
    UniProtKB/TrEMBL
    W8PK18
    Conserved Domains (2) summary
    cd01860
    Location:23185
    Rab5_related; Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion
    pfam00071
    Location:25186
    Ras; Ras family

RefSeqs of Annotated Genomes: Ictalurus punctatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IpCoco_1.2 Primary Assembly

Genomic

  1. NC_030417.1 Reference IpCoco_1.2 Primary Assembly

    Range
    6087100..6104352 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017491739.1XP_017347228.1  ras-related protein Rab-5C

    Related
    ENSIPUP00000029784.1, ENSIPUT00000030986.1
    Conserved Domains (2) summary
    cd01860
    Location:23185
    Rab5_related; Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion
    pfam00071
    Location:25186
    Ras; Ras family
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