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sarm1 sterile alpha and TIR motif containing 1 [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108278180, updated on 20-Aug-2024

Summary

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Gene symbol
sarm1
Gene description
sterile alpha and TIR motif containing 1
See related
EnsemblRapid:ENSIPUG00020011493
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
human zebrafish all
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Genomic context

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See sarm1 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 17 NC_030432.2 (16529085..16537798)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 17 NC_030432.1 (11476651..11482533)

Chromosome 17 - NC_030432.2Genomic Context describing neighboring genes Neighboring gene scavenger receptor class F, member 1 Neighboring gene vitronectin a Neighboring gene solute carrier family 46 member 1 Neighboring gene forkhead box N1 Neighboring gene unc-119 lipid binding chaperone a1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome Display During Testicular Differentiation of Channel Catfish (Ictalurus punctatus) as Revealed by RNA-Seq Analysis. Zeng Q, et al. Biol Reprod, 2016 Jul. PMID 27307075, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NAD+ nucleosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of MyD88-independent toll-like receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to axon injury IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in dendrite IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
NAD(+) hydrolase SARM1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030432.2 Reference Coco_2.0 Primary Assembly

    Range
    16529085..16537798
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017491372.3 → XP_017346861.1  NAD(+) hydrolase SARM1 isoform X1

    UniProtKB/TrEMBL
    A0A2D0SWG0
    Related
    ENSIPUP00020022629.1, ENSIPUT00020026361.1

  2. XM_017491373.3 → XP_017346862.1  NAD(+) hydrolase SARM1 isoform X2

    UniProtKB/TrEMBL
    A0A2D0SVZ9
    Related
    ENSIPUP00020022630.1, ENSIPUT00020026362.1

  3. XM_017491374.3 → XP_017346863.1  NAD(+) hydrolase SARM1 isoform X2

    UniProtKB/TrEMBL
    A0A2D0SVZ9
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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