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folr folate receptor [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108277654, updated on 12-Sep-2024

Summary

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Gene symbol
folr
Gene description
folate receptor
See related
EnsemblRapid:ENSIPUG00020027616
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
zebrafish all
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Genomic context

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See folr in Genome Data Viewer
Location:
chromosome: 17
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 17 NC_030432.2 (126039..139886)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 17 NC_030432.1 (3761872..3771205, complement)

Chromosome 17 - NC_030432.2Genomic Context describing neighboring genes Neighboring gene transmembrane O-methyltransferase Neighboring gene anaphase promoting complex subunit 15 Neighboring gene uncharacterized LOC128635255 Neighboring gene inositol polyphosphate phosphatase-like 1a Neighboring gene paired like homeobox 2A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
folate receptor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030432.2 Reference Coco_2.0 Primary Assembly

    Range
    126039..139886
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_053687146.1 → XP_053543121.1  folate receptor isoform X1

    UniProtKB/TrEMBL
    A0A9F7TRU7
    Related
    ENSIPUP00020051894.1, ENSIPUT00020066391.1

  2. XM_053687148.1 → XP_053543123.1  folate receptor isoform X3

    UniProtKB/TrEMBL
    A0A9F7TPQ7

  3. XM_053687147.1 → XP_053543122.1  folate receptor isoform X2

    UniProtKB/TrEMBL
    A0A2D0SUG3
    Related
    ENSIPUP00020051892.1, ENSIPUT00020066389.1

  4. XM_017490456.3 → XP_017345945.1  folate receptor isoform X2

    UniProtKB/TrEMBL
    A0A2D0SUG3
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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