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macrod1 mono-ADP ribosylhydrolase 1 [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108269168, updated on 12-Sep-2024

Summary

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Gene symbol
macrod1
Gene description
mono-ADP ribosylhydrolase 1
See related
EnsemblRapid:ENSIPUG00020022390
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
zebrafish all
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Genomic context

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See macrod1 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 8 NC_030423.2 (15785527..15873773)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 8 NC_030423.1 (15365229..15454899)

Chromosome 8 - NC_030423.2Genomic Context describing neighboring genes Neighboring gene tRNA phosphotransferase 1 Neighboring gene FERM domain containing kindlin 3b Neighboring gene fibronectin leucine rich transmembrane protein 1b Neighboring gene coiled-coil domain containing 88B Neighboring gene retinal outer segment membrane protein 1b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome Display During Testicular Differentiation of Channel Catfish (Ictalurus punctatus) as Revealed by RNA-Seq Analysis. Zeng Q, et al. Biol Reprod, 2016 Jul. PMID 27307075, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ADP-ribosylglutamate hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA damage response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in peptidyl-glutamate ADP-deribosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in purine nucleoside metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ADP-ribose glycohydrolase MACROD1
Names
MACRO domain containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030423.2 Reference Coco_2.0 Primary Assembly

    Range
    15785527..15873773
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_053682112.1 → XP_053538087.1  ADP-ribose glycohydrolase MACROD1 isoform X3

    UniProtKB/TrEMBL
    A0A9F7RDE8

  2. XM_047157214.2 → XP_047013170.1  ADP-ribose glycohydrolase MACROD1 isoform X2

    UniProtKB/TrEMBL
    A0A979EZL5
    Related
    ENSIPUP00020044437.1, ENSIPUT00020054187.1

  3. XM_017474798.3 → XP_017330287.1  ADP-ribose glycohydrolase MACROD1 isoform X1

    UniProtKB/TrEMBL
    A0A2D0RID7
    Related
    ENSIPUP00020044440.1, ENSIPUT00020054214.1
Nucleotide Protein
Heading Accession and Version

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