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acod1 aconitate decarboxylase 1 [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108266835, updated on 20-Aug-2024

Summary

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Gene symbol
acod1
Gene description
aconitate decarboxylase 1
See related
EnsemblRapid:ENSIPUG00020031164
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Orthologs
human zebrafish all
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Genomic context

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See acod1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 6 NC_030421.2 (22354790..22359979, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 6 NC_030421.1 (11368030..11373252)

Chromosome 6 - NC_030421.2Genomic Context describing neighboring genes Neighboring gene 5-hydroxytryptamine (serotonin) receptor 1Fa Neighboring gene Thioredoxin_like and DUF547 domain-containing protein Neighboring gene type 1 glutamine amidotransferase Neighboring gene potassium channel tetramerisation domain containing 12.1 Neighboring gene LIM domain 7a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cis-aconitate decarboxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030421.2 Reference Coco_2.0 Primary Assembly

    Range
    22354790..22359979 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017470620.3 → XP_017326109.1  cis-aconitate decarboxylase

    UniProtKB/TrEMBL
    A0A2D0R6B1
    Related
    ENSIPUP00020057421.1, ENSIPUT00020075208.1

RNA

  1. XR_008396581.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials