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pla2g10 phospholipase A2 group X [ Ictalurus punctatus (channel catfish) ]

Gene ID: 108256767, updated on 18-Sep-2024

Summary

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Gene symbol
pla2g10
Gene description
phospholipase A2 group X
See related
EnsemblRapid:ENSIPUG00020008121
Gene type
protein coding
RefSeq status
MODEL
Organism
Ictalurus punctatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
Also known as
zgc:92162
Orthologs
zebrafish all
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Genomic context

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See pla2g10 in Genome Data Viewer
Location:
chromosome: 24
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_03 current Coco_2.0 (GCF_001660625.3) 24 NC_030439.2 (8107455..8114938, complement)
101 previous assembly IpCoco_1.2 (GCF_001660625.2) 24 NC_030439.1 (6042251..6049727, complement)

Chromosome 24 - NC_030439.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC128629100 Neighboring gene transfer RNA threonine (anticodon CGU) Neighboring gene zinc finger CCCH-type containing 7A Neighboring gene stannin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent phospholipase A2 activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phospholipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in arachidonate secretion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phospholipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
group 10 secretory phospholipase A2
Names
PLA2c domain-containing protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Coco_2.0 Primary Assembly

Genomic

  1. NC_030439.2 Reference Coco_2.0 Primary Assembly

    Range
    8107455..8114938 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017453973.3 → XP_017309462.1  group 10 secretory phospholipase A2

    UniProtKB/TrEMBL
    A0A2D0PTX5
    Related
    ENSIPUP00020013763.1, ENSIPUT00020017173.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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