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Gm20646 predicted gene 20646 [ Mus musculus (house mouse) ]

Gene ID: 108167623, updated on 25-Jan-2022

Summary

Official Symbol
Gm20646provided by MGI
Official Full Name
predicted gene 20646provided by MGI
Primary source
MGI:MGI:5313093
See related
Ensembl:ENSMUSG00000093436 AllianceGenome:MGI:5313093
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm46091
Expression
Low expression observed in reference dataset See more
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Genomic context

See Gm20646 in Genome Data Viewer
Location:
1 B; 1
Exon count:
4
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (42723698..42783951)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (42684538..42744791)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 46089 Neighboring gene predicted gene, 36822 Neighboring gene POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1 Neighboring gene RIKEN cDNA 2900092D14 gene Neighboring gene POU domain, class 3, transcription factor 3 Neighboring gene POU domain, class 3, transcription factor 3 adjacent noncoding transcript 2 Neighboring gene DNMT1 associated long intergenic non-coding RNA Neighboring gene predicted gene, 53552

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1)¬†

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_168292.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC122898, AC133952
  2. NR_168293.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC122898, AC133952
  3. NR_168294.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC122898, AC133952
    Related
    ENSMUST00000176807.3

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    42723698..42783951
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)