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STARD10 StAR related lipid transfer domain containing 10 [ Homo sapiens (human) ]

Gene ID: 10809, updated on 28-Jun-2020

Summary

Official Symbol
STARD10provided by HGNC
Official Full Name
StAR related lipid transfer domain containing 10provided by HGNC
Primary source
HGNC:HGNC:10666
See related
Ensembl:ENSG00000214530 MIM:617382
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PCTP2; CGI-52; NY-CO-28; SDCCAG28
Expression
Broad expression in liver (RPKM 47.9), stomach (RPKM 44.9) and 23 other tissues See more
Orthologs

Genomic context

See STARD10 in Genome Data Viewer
Location:
11q13.4
Exon count:
7
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 11 NC_000011.10 (72754729..72793705, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (72465774..72504750, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene ARAP1 antisense RNA 2 Neighboring gene ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1 Neighboring gene ribosomal protein S12 pseudogene 20 Neighboring gene uncharacterized LOC105369380 Neighboring gene uncharacterized LOC107984421 Neighboring gene microRNA 4692 Neighboring gene autophagy related 16 like 2 Neighboring gene FCH and double SH3 domains 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

NHGRI GWAS Catalog

Description
Genome-wide association study of Crohn's disease in Koreans revealed three new susceptibility loci and common attributes of genetic susceptibility across ethnic populations.
NHGRI GWA Catalog

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Potential readthrough

Included gene: ARAP1

Homology

Clone Names

  • MGC14401

Gene Ontology Provided by GOA

Function Evidence Code Pubs
lipid binding IEA
Inferred from Electronic Annotation
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
bile acid secretion IEA
Inferred from Electronic Annotation
more info
 
lipid transport IEA
Inferred from Electronic Annotation
more info
 
phosphatidylcholine biosynthetic process TAS
Traceable Author Statement
more info
 
positive regulation of peroxisome proliferator activated receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytosol IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytosol IDA
Inferred from Direct Assay
more info
 
cytosol TAS
Traceable Author Statement
more info
 
intercellular canaliculus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
microvillus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
motile cilium IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
START domain-containing protein 10
Names
PCTP-L
PCTP-like protein
START domain containing 10
StAR-related lipid transfer (START) domain containing 10
antigen NY-CO-28
serologically defined colon cancer antigen 28
stAR-related lipid transfer protein 10

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_006645.2NP_006636.2  START domain-containing protein 10

    See identical proteins and their annotated locations for NP_006636.2

    Status: VALIDATED

    Source sequence(s)
    AP002381, AP003065
    Consensus CDS
    CCDS41688.1
    UniProtKB/Swiss-Prot
    Q9Y365
    UniProtKB/TrEMBL
    A0A024R5L8
    Related
    ENSP00000335247.6, ENST00000334805.10
    Conserved Domains (1) summary
    cd08871
    Location:19241
    START_STARD10-like; Lipid-binding START domain of mammalian STARD10 and related proteins

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p13 Primary Assembly

    Range
    72754729..72793705 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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