U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CAMSAP1-DT CAMSAP1 divergent transcript [ Homo sapiens (human) ]

Gene ID: 107987141, updated on 17-Jun-2024

Summary

Official Symbol
CAMSAP1-DTprovided by HGNC
Official Full Name
CAMSAP1 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:55648
See related
AllianceGenome:HGNC:55648
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 2.6), brain (RPKM 1.2) and 23 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See CAMSAP1-DT in Genome Data Viewer
Location:
9q34.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (135907833..135921030)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (148135188..148148447)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene potassium sodium-activated channel subfamily T member 1 Neighboring gene uncharacterized LOC107987140 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:138695080-138695746 Neighboring gene ReSE screen-validated silencer GRCh37_chr9:138712950-138713111 Neighboring gene calmodulin regulated spectrin associated protein 1 Neighboring gene Sharpr-MPRA regulatory region 6734 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:138770145-138770777 Neighboring gene Sharpr-MPRA regulatory region 8889 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:138780903-138781606 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr9:138796685-138797884 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20489 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20490 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20491 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20492 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29293 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29294 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:138823557-138824056 Neighboring gene Sharpr-MPRA regulatory region 7357 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr9:138838500-138839699 Neighboring gene ReSE screen-validated silencer GRCh37_chr9:138842180-138842463 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:138852839-138853339 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:138860297-138860930 Neighboring gene UBA domain containing 1 Neighboring gene ReSE screen-validated silencer GRCh37_chr9:138863893-138864078 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:138865698-138866480 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:138881416-138882094 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:138882772-138883449 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:138884127-138884804 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:138884805-138885482 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:138904343-138905133 Neighboring gene uncharacterized LOC124902307 Neighboring gene NACC family member 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    135907833..135921030
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001746979.2 RNA Sequence

  2. XR_007061852.1 RNA Sequence

  3. XR_007061859.1 RNA Sequence

  4. XR_007061853.1 RNA Sequence

  5. XR_007061854.1 RNA Sequence

  6. XR_007061860.1 RNA Sequence

  7. XR_007061855.1 RNA Sequence

  8. XR_007061856.1 RNA Sequence

  9. XR_007061857.1 RNA Sequence

  10. XR_007061858.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    148135188..148148447
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007080135.1 RNA Sequence

  2. XR_007080137.1 RNA Sequence

  3. XR_007080133.1 RNA Sequence

  4. XR_007080128.1 RNA Sequence

  5. XR_007080130.1 RNA Sequence

  6. XR_007080129.1 RNA Sequence

  7. XR_007080132.1 RNA Sequence

  8. XR_007080131.1 RNA Sequence

  9. XR_007080134.1 RNA Sequence

  10. XR_007080136.1 RNA Sequence