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LINC02196 long intergenic non-protein coding RNA 2196 [ Homo sapiens (human) ]

Gene ID: 107986402, updated on 8-Apr-2022

Summary

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Official Symbol
LINC02196provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2196provided by HGNC
Primary source
HGNC:HGNC:53062
See related
AllianceGenome:HGNC:53062
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02196 in Genome Data Viewer
Location:
5p15.31
Exon count:
3
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (7036481..7151028)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (6969120..7083679)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374641 Neighboring gene uncharacterized LOC105374642 Neighboring gene RN7SK pseudogene 79 Neighboring gene RNA, 5S ribosomal pseudogene 176 Neighboring gene uncharacterized LOC124900935 Neighboring gene uncharacterized LOC105374643

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    7036481..7151028
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001742592.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    6969120..7083679
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007075446.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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