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LINC02438 long intergenic non-protein coding RNA 2438 [ Homo sapiens (human) ]

Gene ID: 107986264, updated on 17-Jun-2024

Summary

Official Symbol
LINC02438provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2438provided by HGNC
Primary source
HGNC:HGNC:53370
See related
AllianceGenome:HGNC:53370
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC02438 in Genome Data Viewer
Location:
4p15.31
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (19218592..19456990, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (19201094..19439759, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107986263 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21361 Neighboring gene NANOG hESC enhancer GRCh37_chr4:19012316-19012830 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:19085315-19085875 Neighboring gene RNA, 5S ribosomal pseudogene 157 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_77337 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:19431070-19431946 Neighboring gene uncharacterized LOC105374511 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_77374 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:19777224-19778423 Neighboring gene ribosomal protein L21 pseudogene 46 Neighboring gene uncharacterized LOC105374513

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    19218592..19456990 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001741605.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    19201094..19439759 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007074517.1 RNA Sequence