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GSK3B-DT GSK3B divergent transcript [ Homo sapiens (human) ]

Gene ID: 107986119, updated on 10-Dec-2024

Summary

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Official Symbol
GSK3B-DTprovided by HGNC
Official Full Name
GSK3B divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:55635
See related
Ensembl:ENSG00000242622 AllianceGenome:HGNC:55635
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 1.0), prostate (RPKM 0.4) and 24 other tissues See more
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Genomic context

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See GSK3B-DT in Genome Data Viewer
Location:
3q13.33
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (120095104..120110379)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (122814786..122830061)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (119813951..119829226)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene glycogen synthase kinase 3 beta Neighboring gene RFK pseudogene 3 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14634 Neighboring gene Sharpr-MPRA regulatory region 13833 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20330 Neighboring gene microRNA 6529 Neighboring gene RNA, 7SL, cytoplasmic 762, pseudogene Neighboring gene RNA, 7SL, cytoplasmic 397, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_186627.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092910

  2. NR_186628.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092910

  3. NR_186629.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092910

  4. NR_186630.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092910
    Related
    ENST00000834993.1

  5. NR_186631.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092910

  6. NR_186632.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092910

  7. NR_186633.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092910

  8. NR_186634.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092910

  9. NR_186635.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC092910

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    120095104..120110379
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    122814786..122830061
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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