U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LINC01833 long intergenic non-protein coding RNA 1833 [ Homo sapiens (human) ]

Gene ID: 107985879, updated on 29-Mar-2023

Summary

Official Symbol
LINC01833provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1833provided by HGNC
Primary source
HGNC:HGNC:52644
See related
Ensembl:ENSG00000259439 AllianceGenome:HGNC:52644
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
K21.1; RP11-89
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See LINC01833 in Genome Data Viewer
Location:
2p21
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_03 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (44921080..44939199, complement)
RS_2023_03 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (44926349..44944464, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (45148219..45166338, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374573 Neighboring gene VISTA enhancer hs149 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:45153974-45154534 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:45164020-45164553 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:45164554-45165086 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:45166505-45167006 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:45167007-45167506 Neighboring gene SIX3 antisense RNA 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_147194.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AB371449, BM664055
    Related
    ENST00000444871.3
  2. NR_147195.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC012354, BU741130, CN285777
    Related
    ENST00000437916.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    44921080..44939199 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    44926349..44944464 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)