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LINC02798 long intergenic non-protein coding RNA 2798 [ Homo sapiens (human) ]

Gene ID: 107985194, updated on 21-Mar-2023

Summary

Official Symbol
LINC02798provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2798provided by HGNC
Primary source
HGNC:HGNC:54323
See related
Ensembl:ENSG00000227082 AllianceGenome:HGNC:54323
Gene type
protein coding
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in brain (RPKM 1.2), heart (RPKM 0.6) and 13 other tissues See more
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Genomic context

See LINC02798 in Genome Data Viewer
Location:
1p11.2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_03 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (121395572..121463129)
RS_2023_03 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (121404935..121472492)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene SLIT-ROBO Rho GTPase activating protein 2C Neighboring gene Sharpr-MPRA regulatory region 356 duplicate 1 Neighboring gene uncharacterized LOC107985193 Neighboring gene SRGAP2 antisense RNA 1 Neighboring gene Sharpr-MPRA regulatory region 13946 Neighboring gene mitochondrial translational initiation factor 2 pseudogene 1 Neighboring gene embigin pseudogene 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    121395572..121463129
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047438024.1XP_047293980.1  extensin-like

  2. XM_047438021.1XP_047293977.1  extensin-like

RNA

  1. XR_007066533.1 RNA Sequence

  2. XR_007066532.1 RNA Sequence

    Related
    ENST00000670866.1
  3. XR_007066534.1 RNA Sequence

    Related
    ENST00000664311.1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    121404935..121472492
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047443684.1XP_047299640.1  extensin-like

  2. XM_047443683.1XP_047299639.1  extensin-like

RNA

  1. XR_007070584.1 RNA Sequence

  2. XR_007070583.1 RNA Sequence

  3. XR_007070585.1 RNA Sequence