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LOC107925056 valerianol synthase TPS1A-like [ Gossypium hirsutum (cotton) ]

Gene ID: 107925056, updated on 7-Dec-2023

Summary

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Gene symbol
LOC107925056
Gene description
valerianol synthase TPS1A-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium hirsutum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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Location:
chromosome: A10
Exon count:
6
Annotation release Status Assembly Chr Location
101 current Gossypium_hirsutum_v2.1 (GCF_007990345.1) A10 NC_053433.1 (469600..472151, complement)
100 previous assembly ASM98774v1 (GCF_000987745.1) Unplaced Scaffold NW_015962019.1 (2926758..2929957)

Chromosome A10 - NC_053433.1Genomic Context describing neighboring genes Neighboring gene protein LSD1 Neighboring gene lysine-specific demethylase JMJ18 Neighboring gene vetispiradiene synthase 3-like Neighboring gene casbene synthase, chloroplastic-like Neighboring gene vetispiradiene synthase 3-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables terpene synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
valerianol synthase TPS1A-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gossypium hirsutum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Gossypium_hirsutum_v2.1 Primary Assembly

Genomic

  1. NC_053433.1 Reference Gossypium_hirsutum_v2.1 Primary Assembly

    Range
    469600..472151 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041079361.1 → XP_040935295.1  valerianol synthase TPS1A-like

    Conserved Domains (1) summary
    cl00210
    Location:11 → 313
    Isoprenoid_Biosyn_C1; Isoprenoid Biosynthesis enzymes, Class 1
Nucleotide Protein
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