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LOC107924004 squamosa promoter-binding-like protein 7 [ Gossypium hirsutum (cotton) ]

Gene ID: 107924004, updated on 7-Dec-2023

Summary

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Gene symbol
LOC107924004
Gene description
squamosa promoter-binding-like protein 7
Locus tag
ERO13_A12G095900v2
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gossypium hirsutum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Also known as
SPL10
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Genomic context

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Location:
chromosome: A12
Exon count:
3
Annotation release Status Assembly Chr Location
101 current Gossypium_hirsutum_v2.1 (GCF_007990345.1) A12 NC_053435.1 (77092299..77094699)
100 previous assembly ASM98774v1 (GCF_000987745.1) 4 NC_030077.1 (3909505..3912341, complement)

Chromosome A12 - NC_053435.1Genomic Context describing neighboring genes Neighboring gene F-box protein At5g51370-like Neighboring gene CCR4-NOT transcription complex subunit 1 Neighboring gene uncharacterized LOC107938667 Neighboring gene uncharacterized LOC121210873 Neighboring gene small nucleolar RNA R71

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The GhmiR157a-GhSPL10 regulatory module controls initial cellular dedifferentiation and callus proliferation in cotton by modulating ethylene-mediated flavonoid biosynthesis. Wang L, et al. J Exp Bot, 2018 Feb 23. PMID 29253187, Free PMC Article
  2. Genomic organization, differential expression, and functional analysis of the SPL gene family in Gossypium hirsutum. Zhang X, et al. Mol Genet Genomics, 2015 Feb. PMID 25159110

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. An up-regulation of ethylene signaling and the activation of flavonoid biosynthesis in GhSPL10 overexpression lines were associated with initial cellular dedifferentiation and callus proliferation.
    Title: The GhmiR157a-GhSPL10 regulatory module controls initial cellular dedifferentiation and callus proliferation in cotton by modulating ethylene-mediated flavonoid biosynthesis.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
squamosa promoter-binding-like protein 7
Names
SQUAMOSA promoter binding-like transcription factor

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001327231.1 → NP_001314160.1  squamosa promoter-binding-like protein 7

    Status: PROVISIONAL

    Source sequence(s)
    KJ622318
    UniProtKB/TrEMBL
    A0A088DLF7, A0A1U8L534
    Conserved Domains (1) summary
    pfam03110
    Location:124 → 197
    SBP; SBP domain

RefSeqs of Annotated Genomes: Gossypium hirsutum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Gossypium_hirsutum_v2.1 Primary Assembly

Genomic

  1. NC_053435.1 Reference Gossypium_hirsutum_v2.1 Primary Assembly

    Range
    77092299..77094699
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases