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LOC107810774 caffeoyl-CoA O-methyltransferase 6 [ Nicotiana tabacum (common tobacco) ]

Gene ID: 107810774, updated on 28-Dec-2023

Summary

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Gene symbol
LOC107810774
Gene description
caffeoyl-CoA O-methyltransferase 6
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Nicotiana tabacum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Also known as
CCOAOMT6; CCoAMT-6; CCoAOMT-6; NTCCOAOMT
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Genomic context

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Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current Ntab-TN90 (GCF_000715135.1) Unplaced Scaffold NW_015950786.1 (20729..23518, complement)

NW_015950786.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015950786.1 Unplaced Scaffold Reference Ntab-TN90 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The electronic Plant Gene Register. . Plant Physiol, 1997 Mar. PMID 9085582, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables O-methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables S-adenosylmethionine-dependent methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
caffeoyl-CoA O-methyltransferase 6
Names
Trans-caffeoyl-CoA 3-O-methyltransferase 6
XP_016491082.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001325865.1 → NP_001312794.1  caffeoyl-CoA O-methyltransferase 6

    Status: PROVISIONAL

    Source sequence(s)
    Z56282
    UniProtKB/Swiss-Prot
    O04899, O22546, Q42945
    Conserved Domains (2) summary
    COG4122
    Location:27 → 245
    YrrM; Predicted O-methyltransferase YrrM [General function prediction only]
    cl17173
    Location:1 → 247
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

RefSeqs of Annotated Genomes: Nicotiana tabacum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ntab-TN90 Primary Assembly

Genomic

  1. NW_015950786.1 Reference Ntab-TN90 Primary Assembly

    Range
    20729..23518 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016635596.1 → XP_016491082.1  caffeoyl-CoA O-methyltransferase 6

    Conserved Domains (2) summary
    COG4122
    Location:27 → 245
    YrrM; Predicted O-methyltransferase YrrM [General function prediction only]
    cl17173
    Location:1 → 247
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q42945.1 GenPept UniProtKB/Swiss-Prot:Q42945

Gene LinkOut

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Molecular Biology Databases