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Snrpd2 small nuclear ribonucleoprotein D2 [ Mus musculus (house mouse) ]

Gene ID: 107686, updated on 27-Feb-2024

Summary

Official Symbol
Snrpd2provided by MGI
Official Full Name
small nuclear ribonucleoprotein D2provided by MGI
Primary source
MGI:MGI:98345
See related
Ensembl:ENSMUSG00000040824 AllianceGenome:MGI:98345
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
SMD2; 1810009A06Rik
Summary
Predicted to enable U1 snRNP binding activity. Predicted to be involved in spliceosomal snRNP assembly. Predicted to act upstream of or within mRNA processing. Predicted to be located in cytosol and nucleus. Predicted to be part of several cellular components, including methylosome; spliceosomal complex; and spliceosomal snRNP complex. Is expressed in embryo. Human ortholog(s) of this gene implicated in systemic lupus erythematosus. Orthologous to human SNRPD2 (small nuclear ribonucleoprotein D2 polypeptide). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in CNS E11.5 (RPKM 185.9), testis adult (RPKM 149.5) and 25 other tissues See more
Orthologs
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Genomic context

See Snrpd2 in Genome Data Viewer
Location:
7 A3; 7 9.46 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (18883370..18886659)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (19149445..19152734)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E287 Neighboring gene F-box protein 46 Neighboring gene STARR-positive B cell enhancer ABC_E10426 Neighboring gene glutaminyl-peptide cyclotransferase-like Neighboring gene STARR-positive B cell enhancer ABC_E1081 Neighboring gene gastric inhibitory polypeptide receptor Neighboring gene echinoderm microtubule associated protein like 2 Neighboring gene microRNA 330

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Clone Names

  • MGC62953

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 
enables U1 snRNP binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within RNA splicing IEA
Inferred from Electronic Annotation
more info
 
involved_in RNA splicing IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within mRNA processing IEA
Inferred from Electronic Annotation
more info
 
involved_in mRNA splicing, via spliceosome ISO
Inferred from Sequence Orthology
more info
 
involved_in spliceosomal snRNP assembly IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in spliceosomal snRNP assembly ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
part_of SMN-Sm protein complex ISO
Inferred from Sequence Orthology
more info
 
part_of U1 snRNP IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of U1 snRNP ISO
Inferred from Sequence Orthology
more info
 
part_of U12-type spliceosomal complex ISO
Inferred from Sequence Orthology
more info
 
part_of U2 snRNP IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of U2-type catalytic step 2 spliceosome ISO
Inferred from Sequence Orthology
more info
 
part_of U2-type precatalytic spliceosome ISO
Inferred from Sequence Orthology
more info
 
part_of U2-type spliceosomal complex ISO
Inferred from Sequence Orthology
more info
 
part_of U4 snRNP ISO
Inferred from Sequence Orthology
more info
 
part_of U4/U6 x U5 tri-snRNP complex IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of U4/U6 x U5 tri-snRNP complex ISO
Inferred from Sequence Orthology
more info
 
part_of U5 snRNP IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of catalytic step 2 spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of catalytic step 2 spliceosome ISO
Inferred from Sequence Orthology
more info
 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
part_of methylosome ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 
part_of pICln-Sm protein complex IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of pICln-Sm protein complex ISO
Inferred from Sequence Orthology
more info
 
part_of precatalytic spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 
part_of small nuclear ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 
part_of spliceosomal complex ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
small nuclear ribonucleoprotein Sm D2
Names
sm-D2
snRNP core protein D2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_026943.2NP_081219.1  small nuclear ribonucleoprotein Sm D2

    See identical proteins and their annotated locations for NP_081219.1

    Status: VALIDATED

    Source sequence(s)
    AC145199
    Consensus CDS
    CCDS20892.1
    UniProtKB/Swiss-Prot
    P62317
    UniProtKB/TrEMBL
    Q14AF6
    Related
    ENSMUSP00000037597.3, ENSMUST00000049294.4
    Conserved Domains (1) summary
    cd01720
    Location:24113
    Sm_D2; Sm protein D2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    18883370..18886659
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030241969.1XP_030097829.1  small nuclear ribonucleoprotein Sm D2 isoform X1

    UniProtKB/Swiss-Prot
    P62317
    UniProtKB/TrEMBL
    Q14AF6
    Conserved Domains (1) summary
    cd01720
    Location:24113
    Sm_D2; Sm protein D2