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LOC107276510 receptor kinase-like protein Xa21 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 107276510, updated on 21-Dec-2023

Summary

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Gene symbol
LOC107276510
Gene description
receptor kinase-like protein Xa21
Locus tag
OSNPB_110569733
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
Xa21; OsJ_34314
Expression
Restricted expression toward roots before flowering (RPKM 1.1) See more
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Genomic context

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See LOC107276510 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
2
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (21273409..21277458, complement)

Chromosome 11 - NC_029266.1Genomic Context describing neighboring genes Neighboring gene receptor kinase-like protein Xa21 Neighboring gene receptor kinase-like protein Xa21 Neighboring gene receptor kinase-like protein Xa21 Neighboring gene receptor kinase-like protein Xa21 Neighboring gene receptor kinase-like protein Xa21

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029266.1 Chromosome 11 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Paladin, a tyrosine phosphatase-like protein, is required for XA21-mediated immunity in rice. Chen TC, et al. Plant Commun, 2021 Jul 12. PMID 34327325, Free PMC Article
  2. Biosynthesis and secretion of the microbial sulfated peptide RaxX and binding to the rice XA21 immune receptor. Luu DD, et al. Proc Natl Acad Sci U S A, 2019 Apr 23. PMID 30948631, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Paladin, a tyrosine phosphatase-like protein, is required for XA21-mediated immunity in rice.
    Title: Paladin, a tyrosine phosphatase-like protein, is required for XA21-mediated immunity in rice.
  2. Studied activation of rice immune response thru binding of Xanthomonas oryzae pv. oryzae RaxX to rice receptor kinase-like protein Xa21 (XA21.)
    Title: Biosynthesis and secretion of the microbial sulfated peptide RaxX and binding to the rice XA21 immune receptor.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
receptor kinase-like protein Xa21
Names
OSNPB_110569733
Os11g0569733
receptor kinase-like proteni

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029266.1 Reference IRGSP-1.0 Primary Assembly

    Range
    21273409..21277458 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015760811.2 → XP_015616297.1  receptor kinase-like protein Xa21

    UniProtKB/Swiss-Prot
    A0A0P0Y3N4, A0PI95, A3CCH4, Q1MX30, Q2R2D5
    UniProtKB/TrEMBL
    Q40640
    Conserved Domains (6) summary
    COG4886
    Location:357 → 603
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    cd00116
    Location:350 → 664
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:164 → 188
    LRR_RI; leucine-rich repeat [structural motif]
    pfam08263
    Location:43 → 81
    LRRNT_2; Leucine rich repeat N-terminal domain
    pfam13855
    Location:559 → 617
    LRR_8; Leucine rich repeat
    cl21453
    Location:726 → 1019
    PKc_like; Protein Kinases, catalytic domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q2R2D5.1 GenPept UniProtKB/Swiss-Prot:Q2R2D5

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