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LOC107276302 very-long-chain 3-oxoacyl-CoA reductase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 107276302, updated on 21-Dec-2023

Summary

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Gene symbol
LOC107276302
Gene description
very-long-chain 3-oxoacyl-CoA reductase 1
Locus tag
OSNPB_060300200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Biased expression in flowers (RPKM 1.2), flower buds (RPKM 0.6) and 1 other tissue See more
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Genomic context

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Location:
chromosome: 6
Exon count:
4
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (11178994..11181404, complement)

Chromosome 6 - NC_029261.1Genomic Context describing neighboring genes Neighboring gene very-long-chain 3-oxoacyl-CoA reductase-like protein At1g24470 Neighboring gene very-long-chain 3-oxoacyl-CoA reductase 1 Neighboring gene protein transport protein SFT2 Neighboring gene uncharacterized membrane protein At3g27390

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029261.1 Chromosome 6 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ketoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
very-long-chain 3-oxoacyl-CoA reductase 1
Names
Os06g0300200
P0501G08.30
putative b-keto acyl reductase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029261.1 Reference IRGSP-1.0 Primary Assembly

    Range
    11178994..11181404 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015787285.2 → XP_015642771.1  very-long-chain 3-oxoacyl-CoA reductase 1

    UniProtKB/TrEMBL
    A3BAZ2, Q5ZA39
    Conserved Domains (1) summary
    PLN02780
    Location:4 → 311
    PLN02780; ketoreductase/ oxidoreductase
Nucleotide Protein
Heading Accession and Version

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