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LOC107275791 cystathionine beta-lyase, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 107275791, updated on 3-Dec-2024
Gene symbol
LOC107275791
Gene description
cystathionine beta-lyase, chloroplastic
Locus tag
OSNPB_060176900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Location:
chromosome: 6
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (4024859..4028829)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (3861472..3865453)

Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene protein LATERAL BRANCHING OXIDOREDUCTASE 1 Neighboring gene protein SRG1-like Neighboring gene protein LATERAL BRANCHING OXIDOREDUCTASE 1 Neighboring gene cytochrome b-c1 complex subunit 8 Neighboring gene proteasome subunit alpha type-4-1

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in 'de novo' L-methionine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transsulfuration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
cystathionine beta-lyase, chloroplastic
Names
Os06g0176900
P0015E04.31
putative cystathionine beta-lyase

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

    Range
    4024859..4028829
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026026264.2 → XP_025882049.1  cystathionine beta-lyase, chloroplastic isoform X1

    UniProtKB/TrEMBL
    A0A0P0WT28, B9FRT6
    Conserved Domains (1) summary
    cl18945
    Location:2 → 383
    AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...

  2. XM_066311564.1 → XP_066167661.1  cystathionine beta-lyase, chloroplastic isoform X2

    UniProtKB/TrEMBL
    B9FRT6, Q9LWJ2
Nucleotide Protein
Heading Accession and Version

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