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CUBN cubilin [ Parus major (Great Tit) ]

Gene ID: 107200165, updated on 8-Apr-2017

Summary

Gene symbol
CUBN
Gene description
cubilin
Gene type
protein coding
RefSeq status
MODEL
Organism
Parus major
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Paridae; Parus
Orthologs

Genomic context

See CUBN in Genome Data Viewer
Location:
chromosome: 2
Exon count:
67
Annotation release Status Assembly Chr Location
101 current Parus_major1.1 (GCF_001522545.2) 2 NC_031769.1 (20099082..20241132)
100 previous assembly Parus_major1.0.3 (GCF_001522545.1) 2 NC_029269.1 (20099086..20241132)

Chromosome 2 - NC_031769.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107200554 Neighboring gene vimentin Neighboring gene tRNA aspartic acid methyltransferase 1 Neighboring gene Ras suppressor protein 1 Neighboring gene complement C1q like 3

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Parus major Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Parus_major1.1 Primary Assembly

Genomic

  1. NC_031769.1 Reference Parus_major1.1 Primary Assembly

    Range
    20099082..20241132
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015618252.2XP_015473738.1  cubilin

    Conserved Domains (6) summary
    smart00179
    Location:305348
    EGF_CA; Calcium-binding EGF-like domain
    cd00041
    Location:15171627
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00054
    Location:433469
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam00431
    Location:10531160
    CUB; CUB domain
    pfam12947
    Location:353387
    EGF_3; EGF domain
    cl00143
    Location:75133
    SynN; Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may ...
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