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DCPS decapping enzyme, scavenger [ Gekko japonicus ]

Gene ID: 107119892, updated on 14-Mar-2024

Summary

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Gene symbol
DCPS
Gene description
decapping enzyme, scavenger
Gene type
protein coding
RefSeq status
MODEL
Organism
Gekko japonicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Gekkota; Gekkonidae; Gekkoninae; Gekko
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current Gekko_japonicus_V1.1 (GCF_001447785.1) Unplaced Scaffold NW_015173165.1 (361889..453388, complement)

NW_015173165.1Genomic Context describing neighboring genes Neighboring gene ST3 beta-galactoside alpha-2,3-sialyltransferase 4 Neighboring gene TIR domain containing adaptor protein Neighboring gene FAD dependent oxidoreductase domain containing 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_015173165.1 Unplaced Scaffold Reference Gekko_japonicus_V1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA 7-methylguanosine cap binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in deadenylation-dependent decapping of nuclear-transcribed mRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
m7GpppX diphosphatase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gekko japonicus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Gekko_japonicus_V1.1 Primary Assembly

Genomic

  1. NW_015173165.1 Reference Gekko_japonicus_V1.1 Primary Assembly

    Range
    361889..453388 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015422510.1 → XP_015277996.1  m7GpppX diphosphatase isoform X3

    Conserved Domains (3) summary
    COG5075
    Location:42 → 282
    COG5075; Uncharacterized conserved protein [Function unknown]
    pfam05652
    Location:42 → 134
    DcpS; Scavenger mRNA decapping enzyme (DcpS) N-terminal
    cl00228
    Location:164 → 234
    HIT_like; HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis ...

  2. XM_015422509.1 → XP_015277995.1  m7GpppX diphosphatase isoform X2

    Conserved Domains (3) summary
    COG5075
    Location:42 → 319
    COG5075; Uncharacterized conserved protein [Function unknown]
    pfam05652
    Location:42 → 134
    DcpS; Scavenger mRNA decapping enzyme (DcpS) N-terminal
    pfam11969
    Location:164 → 271
    DcpS_C; Scavenger mRNA decapping enzyme C-term binding

  3. XM_015422508.1 → XP_015277994.1  m7GpppX diphosphatase isoform X1

    Conserved Domains (3) summary
    COG5075
    Location:42 → 348
    COG5075; Uncharacterized conserved protein [Function unknown]
    pfam05652
    Location:42 → 134
    DcpS; Scavenger mRNA decapping enzyme (DcpS) N-terminal
    pfam11969
    Location:164 → 300
    DcpS_C; Scavenger mRNA decapping enzyme C-term binding
Nucleotide Protein
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