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MIR3142HG MIR3142 host gene [ Homo sapiens (human) ]

Gene ID: 107075116, updated on 17-Jun-2019

Summary

Official Symbol
MIR3142HGprovided by HGNC
Official Full Name
MIR3142 host geneprovided by HGNC
Primary source
HGNC:HGNC:51944
See related
Ensembl:ENSG00000253522
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in lymph node (RPKM 3.9), appendix (RPKM 2.4) and 15 other tissues See more

Genomic context

See MIR3142HG in Genome Data Viewer
Location:
5q33.3
Exon count:
2
Annotation release Status Assembly Chr Location
109.20190607 current GRCh38.p13 (GCF_000001405.39) 5 NC_000005.10 (160468251..160487426)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene SLU7 homolog, splicing factor Neighboring gene PTTG1 regulator of sister chromatid separation, securin Neighboring gene Sharpr-MPRA regulatory region 10249 Neighboring gene microRNA 3142 Neighboring gene microRNA 146a Neighboring gene ATPase phospholipid transporting 10B (putative) Neighboring gene long intergenic non-protein coding RNA 2159

Genomic regions, transcripts, and products

Genomic Sequence:
NC_000005.10 Chromosome 5 Reference GRCh38.p13 Primary Assembly

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

  • Melatonin metabolism and effects, organism-specific biosystem (from WikiPathways)
    Melatonin metabolism and effects, organism-specific biosystemMelatonin is an important regulator of circadian rythmus and influences also insulin secretion, immune function, retinal function and neuroprotection. The synthesis starts with the amino acid tryptop...

General gene information

Other Names

  • MIR146A host

Gene Ontology Provided by GOA

Process Evidence Code Pubs
gene silencing by miRNA IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
RISC complex IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_132748.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC091842, AL389942, BQ425371, DQ658414
    Related
    ENST00000517927.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p13 Primary Assembly

    Range
    160468251..160487426
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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