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A330093E20Rik RIKEN cDNA A330093E20 gene [ Mus musculus (house mouse) ]

Gene ID: 107003, updated on 8-Feb-2024

Summary

Official Symbol
A330093E20Rikprovided by MGI
Official Full Name
RIKEN cDNA A330093E20 geneprovided by MGI
Primary source
MGI:MGI:2147325
See related
AllianceGenome:MGI:2147325
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in cortex adult (RPKM 3.3), frontal lobe adult (RPKM 3.3) and 11 other tissues See more
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Genomic context

See A330093E20Rik in Genome Data Viewer
Location:
18 C; 18 24.34 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (45816554..46178327, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (45683487..46045260, complement)

Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2 Neighboring gene predicted gene, 31907 Neighboring gene predicted gene, 32139 Neighboring gene predicted gene, 46623 Neighboring gene predicted gene, 41718 Neighboring gene STARR-seq mESC enhancer starr_44493 Neighboring gene STARR-seq mESC enhancer starr_44494 Neighboring gene predicted gene, 26262 Neighboring gene CapStarr-seq enhancer MGSCv37_chr18:46252362-46252681 Neighboring gene STARR-positive B cell enhancer ABC_E7582 Neighboring gene predicted gene, 52355 Neighboring gene predicted gene, 51427 Neighboring gene tripartite motif-containing 36

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_040342.1 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    AC101593, AC129180, AC135110

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000084.7 Reference GRCm39 C57BL/6J

    Range
    45816554..46178327 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)