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MC1R melanocortin 1 receptor [ Calidris pugnax (ruff) ]

Gene ID: 106888292, updated on 3-Aug-2024
Gene symbol
MC1R
Gene description
melanocortin 1 receptor
See related
Ensembl:ENSCPUG00000010638
Gene type
protein coding
RefSeq status
MODEL
Organism
Calidris pugnax
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Charadriiformes; Scolopacidae; Calidris
Orthologs
all
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See MC1R in Genome Data Viewer
Location:
chromosome: Un
Exon count:
1
Annotation release Status Assembly Chr Location
100 current ASM143184v1 (GCF_001431845.1) Unplaced Scaffold NW_015090842.1 (10201411..10202590)

NW_015090842.1Genomic Context describing neighboring genes Neighboring gene spire type actin nucleation factor 2 Neighboring gene TCF25 ribosome quality control complex subunit Neighboring gene tubulin beta chain-like Neighboring gene tubulin beta chain-like

Genomic Sequence:
NW_015090842.1 Unplaced Scaffold Reference ASM143184v1

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables melanocyte-stimulating hormone receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
melanocyte-stimulating hormone receptor

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RefSeqs of Annotated Genomes: Calidris pugnax Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM143184v1

Genomic

  1. NW_015090842.1 Reference ASM143184v1

    Range
    10201411..10202590
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014942412.1 → XP_014797898.1  melanocyte-stimulating hormone receptor

    Related
    ENSCPUP00000015252.1, ENSCPUT00000018093.1
    Conserved Domains (2) summary
    pfam00001
    Location:53 → 295
    7tm_1; 7 transmembrane receptor (rhodopsin family)
    cl21561
    Location:43 → 186
    7tm_4; Olfactory receptor
Nucleotide Protein
Heading Accession and Version

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