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ARHGAP42 Rho GTPase activating protein 42 [ Alligator mississippiensis (American alligator) ]

Gene ID: 106736810, updated on 7-Jul-2018

Summary

Gene symbol
ARHGAP42
Gene description
Rho GTPase activating protein 42
Locus tag
Y1Q_0023035
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs

Genomic context

See ARHGAP42 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
27
Annotation release Status Assembly Chr Location
102 current ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017708054.1 (11404564..11731920, complement)

NW_017708054.1Genomic Context describing neighboring genes Neighboring gene transient receptor potential cation channel subfamily C member 6 Neighboring gene cilia- and flagella-associated protein 58-like Neighboring gene progesterone receptor Neighboring gene uncharacterized LOC109281827 Neighboring gene uncharacterized LOC109281829 Neighboring gene contactin 5 Neighboring gene uncharacterized LOC109281858

Genomic regions, transcripts, and products

Genomic Sequence:
NW_017708054.1 Unplaced Scaffold Reference ASM28112v4 Primary Assembly

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General protein information

Preferred Names
rho GTPase-activating protein 42

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Alligator mississippiensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM28112v4 Primary Assembly

Genomic

  1. NW_017708054.1 Reference ASM28112v4 Primary Assembly

    Range
    11404564..11731920 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019482040.1XP_019337585.1  rho GTPase-activating protein 42 isoform X1

  2. XM_019482041.1XP_019337586.1  rho GTPase-activating protein 42 isoform X3

  3. XM_006274137.3XP_006274199.1  rho GTPase-activating protein 42 isoform X2

    See identical proteins and their annotated locations for XP_006274199.1

    UniProtKB/TrEMBL
    A0A151P7J0
    Conserved Domains (4) summary
    cd07634
    Location:19225
    BAR_GAP10-like; The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like
    cd12066
    Location:820874
    SH3_GRAF3; Src Homology 3 domain of GTPase Regulator Associated with Focal adhesion kinase 3
    cd04374
    Location:369567
    RhoGAP_Graf; RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences ...
    cd01249
    Location:267376
    BAR-PH_GRAF_family; GTPase Regulator Associated with Focal adhesion and related proteins Pleckstrin homology (PH) domain
  4. XM_019482039.1XP_019337584.1  rho GTPase-activating protein 42 isoform X1

  5. XM_019482038.1XP_019337583.1  rho GTPase-activating protein 42 isoform X1

  6. XM_019482042.1XP_019337587.1  rho GTPase-activating protein 42 isoform X4

    Conserved Domains (4) summary
    cd12066
    Location:766820
    SH3_GRAF3; Src Homology 3 domain of GTPase Regulator Associated with Focal adhesion kinase 3
    cd04374
    Location:315513
    RhoGAP_Graf; RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences ...
    cd01249
    Location:213322
    BAR-PH_GRAF_family; GTPase Regulator Associated with Focal adhesion and related proteins Pleckstrin homology (PH) domain
    cl12013
    Location:1171
    BAR; The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature
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