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Smim29 small integral membrane protein 29 [ Mus musculus (house mouse) ]

Gene ID: 106672, updated on 3-Apr-2024

Summary

Official Symbol
Smim29provided by MGI
Official Full Name
small integral membrane protein 29provided by MGI
Primary source
MGI:MGI:2146839
See related
Ensembl:ENSMUSG00000062753 AllianceGenome:MGI:2146839
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SMIM29 (small integral membrane protein 29). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in spleen adult (RPKM 22.5), thymus adult (RPKM 21.4) and 28 other tissues See more
Orthologs
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Genomic context

Location:
17 A3.3; 17 14.53 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (27782743..27784706, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (27563769..27565728, complement)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_42159 Neighboring gene STARR-seq mESC enhancer starr_42160 Neighboring gene predicted gene 9703 Neighboring gene STARR-seq mESC enhancer starr_42162 Neighboring gene high mobility group AT-hook 1 Neighboring gene nudix hydrolase 3 Neighboring gene STARR-positive B cell enhancer ABC_E8662 Neighboring gene STARR-seq mESC enhancer starr_42166 Neighboring gene STARR-seq mESC enhancer starr_42169 Neighboring gene ribosomal protein S10 Neighboring gene predicted gene 15420

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Gene trapped (1) 

General gene information

Markers

Clone Names

  • MGC41609

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
small integral membrane protein 29
Names
uncharacterized protein C6orf1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001002895.3NP_001002895.2  small integral membrane protein 29 isoform 1

    See identical proteins and their annotated locations for NP_001002895.2

    Status: VALIDATED

    Source sequence(s)
    AC127341
    Consensus CDS
    CCDS37521.1
    UniProtKB/Swiss-Prot
    Q3V2N7, Q8R043
    UniProtKB/TrEMBL
    A0A338P7F9
    Related
    ENSMUSP00000116199.2, ENSMUST00000154473.9
  2. NM_001413714.1NP_001400643.1  small integral membrane protein 29 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC127341
    UniProtKB/Swiss-Prot
    Q3V2N7, Q8R043
  3. NM_001413715.1NP_001400644.1  small integral membrane protein 29 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC127341
    UniProtKB/Swiss-Prot
    Q3V2N7, Q8R043
    Related
    ENSMUSP00000156249.2, ENSMUST00000145183.3
  4. NM_001413717.1NP_001400646.1  small integral membrane protein 29 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC127341
    UniProtKB/Swiss-Prot
    Q3V2N7, Q8R043
    Related
    ENSMUSP00000156204.2, ENSMUST00000232276.2
  5. NM_001413718.1NP_001400647.1  small integral membrane protein 29 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC127341
    Related
    ENSMUSP00000156360.2, ENSMUST00000231753.2
  6. NM_001413719.1NP_001400648.1  small integral membrane protein 29 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC127341
    Related
    ENSMUSP00000156365.2, ENSMUST00000232203.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    27782743..27784706 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030249422.2XP_030105282.2  small integral membrane protein 29 isoform X2