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gpx3 glutathione peroxidase 3 [ Salmo salar (Atlantic salmon) ]

Gene ID: 106612297, updated on 30-Nov-2023

Summary

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Gene symbol
gpx3
Gene description
glutathione peroxidase 3
See related
Ensembl:ENSSSAG00000092821
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See gpx3 in Genome Data Viewer
Location:
chromosome: ssa09
Exon count:
5
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa09 NC_059450.1 (93754543..93783004)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa09 NC_027308.1 (88712149..88742308)

Chromosome ssa09 - NC_059450.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase synoviolin-like Neighboring gene MAD homolog 5 (Drosophila) Neighboring gene TNFAIP3-interacting protein 1 Neighboring gene cationic amino acid transporter 2 Neighboring gene annexin A6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Exploring the transcriptome of Atlantic salmon (Salmo salar) skin, a major defense organ. Micallef G, et al. Mar Biotechnol (NY), 2012 Oct. PMID 22527268
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glutathione peroxidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in response to oxidative stress IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glutathione peroxidase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059450.1 Reference Ssal_v3.1

    Range
    93754543..93783004
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014213339.2 → XP_014068814.1  glutathione peroxidase 3

    UniProtKB/TrEMBL
    A0A1S3SWV1
    Related
    ENSSSAP00000173509.1, ENSSSAT00000205754.1
    Conserved Domains (1) summary
    cd00340
    Location:39 → 212
    GSH_Peroxidase; Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per ...
Nucleotide Protein
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