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LOC106607328 apoptosis regulator BAX [ Salmo salar (Atlantic salmon) ]

Gene ID: 106607328, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106607328
Gene description
apoptosis regulator BAX
See related
Ensembl:ENSSSAG00000064392
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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Location:
chromosome: ssa06
Exon count:
8
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa06 NC_059447.1 (39684214..39762559)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa06 NC_027305.1 (36608570..36623696)

Chromosome ssa06 - NC_059447.1Genomic Context describing neighboring genes Neighboring gene sorting nexin-8-like Neighboring gene protein tweety homolog 3 Neighboring gene beta-1,3-N-acetylglucosaminyltransferase lunatic fringe Neighboring gene small nucleolar RNA SNORD35 Neighboring gene small nucleolar RNA SNORD35 Neighboring gene small nucleolar RNA SNORD35 Neighboring gene small nucleolar RNA SNORD35 Neighboring gene uncharacterized LOC123743444 Neighboring gene small nucleolar RNA SNORD35 Neighboring gene small nucleolar RNA SNORD35 Neighboring gene 40S ribosomal protein S11

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A de novo Full-Length mRNA Transcriptome Generated From Hybrid-Corrected PacBio Long-Reads Improves the Transcript Annotation and Identifies Thousands of Novel Splice Variants in Atlantic Salmon. Ramberg S, et al. Front Genet, 2021. PMID 33986770, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein homodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in extrinsic apoptotic signaling pathway in absence of ligand IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intrinsic apoptotic signaling pathway in response to DNA damage IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitochondrial fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in release of cytochrome c from mitochondria IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial outer membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
apoptosis regulator BAX

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059447.1 Reference Ssal_v3.1

    Range
    39684214..39762559
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045720553.1 → XP_045576509.1  apoptosis regulator BAX isoform X1

  2. XM_014204188.2 → XP_014059663.1  apoptosis regulator BAX isoform X2

    UniProtKB/TrEMBL
    A0A1S3S5P6
    Related
    ENSSSAP00000134738.1, ENSSSAT00000172754.1
    Conserved Domains (1) summary
    cd06845
    Location:28 → 168
    Bcl-2_like; Apoptosis regulator proteins of the Bcl-2 family, named after B-cell lymphoma 2. This alignment model spans what have been described as Bcl-2 homology regions BH1, BH2, BH3, and BH4. Many members of this family have an additional C-terminal transmembrane ...
Nucleotide Protein
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