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LOC106589393 multiple inositol polyphosphate phosphatase 1-like [ Salmo salar (Atlantic salmon) ]

Gene ID: 106589393, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106589393
Gene description
multiple inositol polyphosphate phosphatase 1-like
See related
Ensembl:ENSSSAG00000086246
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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Location:
chromosome: ssa28
Exon count:
5
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa28 NC_059469.1 (7187274..7193520, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa28 NC_027327.1 (7083517..7089783, complement)

Chromosome ssa28 - NC_059469.1Genomic Context describing neighboring genes Neighboring gene outer mitochondrial transmembrane helix translocase Neighboring gene bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 2-like Neighboring gene phosphatidylcholine:ceramide cholinephosphotransferase 1-like Neighboring gene N-acylsphingosine amidohydrolase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A de novo Full-Length mRNA Transcriptome Generated From Hybrid-Corrected PacBio Long-Reads Improves the Transcript Annotation and Identifies Thousands of Novel Splice Variants in Atlantic Salmon. Ramberg S, et al. Front Genet, 2021. PMID 33986770, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acid phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables inositol phosphate phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
multiple inositol polyphosphate phosphatase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059469.1 Reference Ssal_v3.1

    Range
    7187274..7193520 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014179302.2 → XP_014034777.1  multiple inositol polyphosphate phosphatase 1-like

    UniProtKB/TrEMBL
    A0A1S3Q4B0
    Related
    ENSSSAP00000122232.1, ENSSSAT00000250973.1
    Conserved Domains (1) summary
    pfam00328
    Location:78 → 416
    His_Phos_2; Histidine phosphatase superfamily (branch 2)
Nucleotide Protein
Heading Accession and Version

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