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sema7a semaphorin 7A (JohnMiltonHagen blood group) [ Salmo salar (Atlantic salmon) ]

Gene ID: 106584837, updated on 13-Mar-2024

Summary

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Gene symbol
sema7a
Gene description
semaphorin 7A (JohnMiltonHagen blood group)
See related
Ensembl:ENSSSAG00000098361
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Orthologs
zebrafish all
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Genomic context

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See sema7a in Genome Data Viewer
Location:
chromosome: ssa23
Exon count:
14
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa23 NC_059464.1 (50979017..51100174, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa23 NC_027322.1 (48273074..48374397, complement)

Chromosome ssa23 - NC_059464.1Genomic Context describing neighboring genes Neighboring gene signaling receptor and transporter of retinol STRA6 Neighboring gene immunoglobulin superfamily containing leucine-rich repeat protein 2 Neighboring gene nei-like DNA glycosylase 1 Neighboring gene mannosidase, alpha, class 2C, member 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chemorepellent activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables integrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables semaphorin receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in integrin-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of axon extension involved in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neural crest cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of ERK1 and ERK2 cascade IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of axon extension IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of macrophage cytokine production IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in semaphorin-plexin signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
semaphorin-7A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059464.1 Reference Ssal_v3.1

    Range
    50979017..51100174 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045706116.1 → XP_045562072.1  semaphorin-7A

    UniProtKB/TrEMBL
    A0A1S3PE77
    Related
    ENSSSAP00000165263.1, ENSSSAT00000206625.1
    Conserved Domains (4) summary
    smart00423
    Location:458 → 479
    PSI; domain found in Plexins, Semaphorins and Integrins
    cd00096
    Location:531 → 537
    Ig; Ig strand A [structural motif]
    cl11960
    Location:531 → 621
    Ig; Immunoglobulin domain
    cl15693
    Location:40 → 456
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins
Nucleotide Protein
Heading Accession and Version

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