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acod1 aconitate decarboxylase 1 [ Salmo salar (Atlantic salmon) ]

Gene ID: 106581616, updated on 13-Mar-2024

Summary

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Gene symbol
acod1
Gene description
aconitate decarboxylase 1
See related
Ensembl:ENSSSAG00000031095
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Orthologs
human zebrafish all
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Genomic context

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See acod1 in Genome Data Viewer
Location:
chromosome: ssa21
Exon count:
5
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa21 NC_059462.1 (693249..701640, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa21 NC_027320.1 (647384..654210, complement)

Chromosome ssa21 - NC_059462.1Genomic Context describing neighboring genes Neighboring gene F-box and leucine-rich repeat protein 3a Neighboring gene CLN5 intracellular trafficking protein Neighboring gene potassium channel tetramerisation domain containing 12.1 Neighboring gene uncharacterized LOC123729561

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cis-aconitate decarboxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059462.1 Reference Ssal_v3.1

    Range
    693249..701640 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014163747.2 → XP_014019222.1  cis-aconitate decarboxylase

    UniProtKB/TrEMBL
    A0A1S3NUY9
    Related
    ENSSSAP00000026917.2, ENSSSAT00000045882.2
    Conserved Domains (1) summary
    pfam03972
    Location:14 → 449
    MmgE_PrpD; MmgE/PrpD family
Nucleotide Protein
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