U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC106581032 NAD(+) hydrolase SARM1 [ Salmo salar (Atlantic salmon) ]

Gene ID: 106581032, updated on 30-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
LOC106581032
Gene description
NAD(+) hydrolase SARM1
See related
Ensembl:ENSSSAG00000053846
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC106581032 in Genome Data Viewer
Location:
chromosome: ssa20
Exon count:
10
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa20 NC_059461.1 (61921958..61935061)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa20 NC_027319.1 (55916448..55929152)

Chromosome ssa20 - NC_059461.1Genomic Context describing neighboring genes Neighboring gene scavenger receptor class F member 1 Neighboring gene vitronectin Neighboring gene proton-coupled folate transporter-like Neighboring gene solute carrier family 13 member 5

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A de novo Full-Length mRNA Transcriptome Generated From Hybrid-Corrected PacBio Long-Reads Improves the Transcript Annotation and Identifies Thousands of Novel Splice Variants in Atlantic Salmon. Ramberg S, et al. Front Genet, 2021. PMID 33986770, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NAD+ nucleosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of MyD88-independent toll-like receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to axon injury IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in dendrite IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
NAD(+) hydrolase SARM1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059461.1 Reference Ssal_v3.1

    Range
    61921958..61935061
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014162702.2 → XP_014018177.1  NAD(+) hydrolase SARM1

    UniProtKB/TrEMBL
    A0A1S3NRY2, A0A1S3SZZ0
    Related
    ENSSSAP00000055907.1, ENSSSAT00000085494.2
    Conserved Domains (4) summary
    cd09501
    Location:412 → 480
    SAM_SARM1-like_repeat1; SAM domain ot SARM1-like proteins, repeat 1
    cd09502
    Location:481 → 548
    SAM_SARM1-like_repeat2; SAM domain of SARM1-like, repeat 2
    smart00454
    Location:412 → 479
    SAM; Sterile alpha motif
    smart00255
    Location:561 → 698
    TIR; Toll - interleukin 1 - resistance
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases