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agxtb alanine--glyoxylate and serine--pyruvate aminotransferase b [ Salmo salar (Atlantic salmon) ]

Gene ID: 106568771, updated on 13-Mar-2024

Summary

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Gene symbol
agxtb
Gene description
alanine--glyoxylate and serine--pyruvate aminotransferase b
See related
Ensembl:ENSSSAG00000052770
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Also known as
SPYA; agxt
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: ssa14
Exon count:
12
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa14 NC_059455.1 (11081982..11097485)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa14 NC_027313.1 (10963306..10974706)

Chromosome ssa14 - NC_059455.1Genomic Context describing neighboring genes Neighboring gene solute carrier organic anion transporter family member 2A1-like Neighboring gene kinesin family member 1Ab Neighboring gene bcl-2-related ovarian killer protein homolog A Neighboring gene transfer RNA valine (anticodon CAC)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. Leong JS, et al. BMC Genomics, 2010 Apr 30. PMID 20433749, Free PMC Article
  2. A de novo Full-Length mRNA Transcriptome Generated From Hybrid-Corrected PacBio Long-Reads Improves the Transcript Annotation and Identifies Thousands of Novel Splice Variants in Atlantic Salmon. Ramberg S, et al. Front Genet, 2021. PMID 33986770, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alanine-glyoxylate transaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine-pyruvate transaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycine biosynthetic process, by transamination of glyoxylate IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in peroxisome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alanine--glyoxylate and serine--pyruvate aminotransferase b
Names
Serine--pyruvate aminotransferase, mitochondrial
alanine-glyoxylate aminotransferase
XP_013994912.1
XP_045549821.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059455.1 Reference Ssal_v3.1

    Range
    11081982..11097485
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045693865.1 → XP_045549821.1  alanine--glyoxylate and serine--pyruvate aminotransferase b isoform X2

  2. XM_014139437.2 → XP_013994912.1  alanine--glyoxylate and serine--pyruvate aminotransferase b isoform X1

    UniProtKB/TrEMBL
    B5X356
    Related
    ENSSSAP00000053908.2, ENSSSAT00000083163.2
    Conserved Domains (2) summary
    cd06451
    Location:60 → 402
    AGAT_like; Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), ...
    pfam00266
    Location:58 → 405
    Aminotran_5; Aminotransferase class-V
Nucleotide Protein
Heading Accession and Version

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