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LOC106564913 sphingosine kinase 1-like [ Salmo salar (Atlantic salmon) ]

Gene ID: 106564913, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106564913
Gene description
sphingosine kinase 1-like
See related
Ensembl:ENSSSAG00000040740
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC106564913 in Genome Data Viewer
Location:
chromosome: ssa12
Exon count:
5
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa12 NC_059453.1 (32328923..32356101)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa12 NC_027311.1 (24262391..24289434)

Chromosome ssa12 - NC_059453.1Genomic Context describing neighboring genes Neighboring gene scaffold attachment factor B1-like Neighboring gene cytoglobin-2-like Neighboring gene (E3-independent) E2 ubiquitin-conjugating enzyme UBE2O-like Neighboring gene inactive rhomboid protein 2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-erythro-sphingosine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to growth factor stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingosine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingosine kinase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059453.1 Reference Ssal_v3.1

    Range
    32328923..32356101
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014131419.2 → XP_013986894.1  sphingosine kinase 1-like

    UniProtKB/TrEMBL
    A0A1S3L8T3, A0A1S3PXZ0
    Related
    ENSSSAP00000157237.1, ENSSSAT00000178167.1
    Conserved Domains (2) summary
    COG1597
    Location:154 → 560
    LCB5; Diacylglycerol kinase family enzyme [Lipid transport and metabolism, General function prediction only]
    pfam00781
    Location:155 → 293
    DAGK_cat; Diacylglycerol kinase catalytic domain
Nucleotide Protein
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