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smpd1 sphingomyelin phosphodiesterase 1 [ Salmo salar (Atlantic salmon) ]

Gene ID: 106563923, updated on 13-Mar-2024

Summary

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Gene symbol
smpd1
Gene description
sphingomyelin phosphodiesterase 1
See related
Ensembl:ENSSSAG00000006638
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Orthologs
human zebrafish all
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Genomic context

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See smpd1 in Genome Data Viewer
Location:
chromosome: ssa11
Exon count:
9
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa11 NC_059452.1 (107860481..107874984, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa11 NC_027310.1 (91808726..91824017)

Chromosome ssa11 - NC_059452.1Genomic Context describing neighboring genes Neighboring gene keratin-associated protein 16-1-like Neighboring gene transmembrane phosphatase with tensin homology Neighboring gene uncharacterized LOC106563920 Neighboring gene serine-rich adhesin for platelets

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A de novo Full-Length mRNA Transcriptome Generated From Hybrid-Corrected PacBio Long-Reads Improves the Transcript Annotation and Identifies Thousands of Novel Splice Variants in Atlantic Salmon. Ramberg S, et al. Front Genet, 2021. PMID 33986770, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acid sphingomyelin phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingomyelin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingomyelin phosphodiesterase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059452.1 Reference Ssal_v3.1

    Range
    107860481..107874984 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014129868.2 → XP_013985343.2  sphingomyelin phosphodiesterase

    Related
    ENSSSAP00000177372.1, ENSSSAT00000235266.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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