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LOC106560862 E3 ubiquitin-protein ligase Siah1 [ Salmo salar (Atlantic salmon) ]

Gene ID: 106560862, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106560862
Gene description
E3 ubiquitin-protein ligase Siah1
See related
Ensembl:ENSSSAG00000102245
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Also known as
siah1
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Genomic context

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Location:
chromosome: ssa10
Exon count:
5
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa10 NC_059451.1 (86714301..86738005)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa10 NC_027309.1 (78956155..78979872)

Chromosome ssa10 - NC_059451.1Genomic Context describing neighboring genes Neighboring gene cerebellin-1 Neighboring gene NEDD4-binding protein 1 Neighboring gene lon peptidase 2, peroxisomal Neighboring gene uncharacterized LOC106560861 Neighboring gene interleukin 34

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin conjugating enzyme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase Siah1
Names
siah E3 ubiquitin protein ligase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059451.1 Reference Ssal_v3.1

    Range
    86714301..86738005
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014124245.2 → XP_013979720.1  E3 ubiquitin-protein ligase Siah1 isoform X2

    UniProtKB/TrEMBL
    A0A1S3KM36
    Related
    ENSSSAP00000086195.2, ENSSSAT00000120077.2
    Conserved Domains (2) summary
    pfam03145
    Location:86 → 282
    Sina; Seven in absentia protein family
    cd16752
    Location:40 → 90
    RING-HC_SIAH2; RING finger, HC subclass, found in seven in absentia homolog 2 (SIAH2) and similar proteins

  2. XM_014124243.2 → XP_013979718.1  E3 ubiquitin-protein ligase Siah1 isoform X2

    UniProtKB/TrEMBL
    A0A1S3KM36
    Conserved Domains (2) summary
    pfam03145
    Location:86 → 282
    Sina; Seven in absentia protein family
    cd16752
    Location:40 → 90
    RING-HC_SIAH2; RING finger, HC subclass, found in seven in absentia homolog 2 (SIAH2) and similar proteins

  3. XM_014124246.2 → XP_013979721.1  E3 ubiquitin-protein ligase Siah1 isoform X3

    UniProtKB/TrEMBL
    A0A1S3KLW8
    Related
    ENSSSAP00000165411.1, ENSSSAT00000174249.1
    Conserved Domains (2) summary
    cd16751
    Location:39 → 78
    RING-HC_SIAH1; RING finger, HC subclass, found in seven in absentia homolog 1 (SIAH1) and similar proteins
    pfam03145
    Location:82 → 278
    Sina; Seven in absentia protein family

  4. XM_014124242.2 → XP_013979717.1  E3 ubiquitin-protein ligase Siah1 isoform X1

    UniProtKB/TrEMBL
    A0A1S3KM78
    Related
    ENSSSAP00000086191.2, ENSSSAT00000120073.2
    Conserved Domains (2) summary
    cd16751
    Location:92 → 131
    RING-HC_SIAH1; RING finger, HC subclass, found in seven in absentia homolog 1 (SIAH1) and similar proteins
    pfam03145
    Location:135 → 331
    Sina; Seven in absentia protein family
Nucleotide Protein
Heading Accession and Version

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