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OGN osteoglycin [ Sus scrofa (pig) ]

Gene ID: 106509723, updated on 1-Mar-2025

Summary

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Official Symbol
OGNprovided by VGNC
Official Full Name
osteoglycinprovided by VGNC
Primary source
VGNC:VGNC:91028
See related
Ensembl:ENSSSCG00000034607 RGD:13945830
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in subcutaneous adipose (RPKM 93.4), lung (RPKM 60.4) and 7 other tissues See more
Orthologs
human mouse all
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Genomic context

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See OGN in Genome Data Viewer
Location:
chromosome: 3
Exon count:
7
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 3 NC_010445.4 (42116521..42135940, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 3 NC_010445.3 (43250528..43259180)

Chromosome 3 - NC_010445.4Genomic Context describing neighboring genes Neighboring gene isoleucyl-tRNA synthetase 1 Neighboring gene nucleolar protein 8 Neighboring gene centromere protein P Neighboring gene osteomodulin Neighboring gene asporin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Small leucine-rich repeat proteoglycans associated with mature insoluble elastin serve as binding sites for galectins. Itoh A, et al. Biosci Biotechnol Biochem, 2017 Nov. PMID 28958189
  2. Porcine OGN and ASPN: mapping, polymorphisms and use for quantitative trait loci identification for growth and carcass traits in a Meishan x Piétrain intercross. Stratil A, et al. Anim Genet, 2006 Aug. PMID 16879361
  3. Comparative analysis of protein coding sequences from human, mouse and the domesticated pig. Jørgensen FG, et al. BMC Biol, 2005 Jan 28. PMID 15679890, Free PMC Article
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Mapping of the OGN and ASPN genes and association with growth and carcass traits.
    Title: Porcine OGN and ASPN: mapping, polymorphisms and use for quantitative trait loci identification for growth and carcass traits in a Meishan x Piétrain intercross.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mimecan
Names
osteoglycin/mimecan

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001315728.1 → NP_001302657.1  mimecan precursor

    Status: PROVISIONAL

    Source sequence(s)
    LC060063
    UniProtKB/TrEMBL
    A0A0H5ANC0, A0A4X1TYW8, A0A8D0X3E2
    Conserved Domains (2) summary
    sd00033
    Location:123 → 144
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:143 → 225
    LRR_8; Leucine rich repeat

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010445.4 Reference Sscrofa11.1 Primary Assembly

    Range
    42116521..42135940 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013995780.2 → XP_013851234.1  mimecan isoform X1

    UniProtKB/TrEMBL
    A0A0H5ANC0, A0A4X1TYW8, A0A8D0X3E2
    Related
    ENSSSCP00000045106.1, ENSSSCT00000038459.3
    Conserved Domains (2) summary
    sd00033
    Location:123 → 144
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:143 → 225
    LRR_8; Leucine rich repeat

  2. XM_021085818.1 → XP_020941477.1  mimecan isoform X1

    UniProtKB/TrEMBL
    A0A0H5ANC0, A0A4X1TYW8, A0A8D0X3E2
    Conserved Domains (2) summary
    sd00033
    Location:123 → 144
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:143 → 225
    LRR_8; Leucine rich repeat
Nucleotide Protein
Heading Accession and Version

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