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TOM1L2 target of myb1 like 2 membrane trafficking protein [ Sus scrofa (pig) ]

Gene ID: 106508687, updated on 13-Mar-2024

Summary

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Official Symbol
TOM1L2provided by VGNC
Official Full Name
target of myb1 like 2 membrane trafficking proteinprovided by VGNC
Primary source
VGNC:VGNC:94303
See related
Ensembl:ENSSSCG00000038639
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in subcutaneous adipose (RPKM 22.0), kidney (RPKM 21.5) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 12
Exon count:
20
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 12 NC_010454.4 (60652153..60729257)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) Unplaced Scaffold NW_003540721.1 (596..19639)

Chromosome 12 - NC_010454.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110256135 Neighboring gene ATP synthase mitochondrial F1 complex assembly factor 2 Neighboring gene dynein regulatory complex subunit 3 Neighboring gene uncharacterized LOC110256136 Neighboring gene sterol regulatory element binding transcription factor 1 Neighboring gene retinoic acid induced 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables clathrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TOM1-like protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010454.4 Reference Sscrofa11.1 Primary Assembly

    Range
    60652153..60729257
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021068013.1 → XP_020923672.1  TOM1-like protein 2 isoform X8

    UniProtKB/TrEMBL
    A0A287BKF0, A0A8D1N319, A0A8D2CEC0
    Related
    ENSSSCP00000056642.2, ENSSSCT00000060587.2
    Conserved Domains (2) summary
    cd03565
    Location:12 → 152
    VHS_Tom1; VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of ...
    cl03906
    Location:217 → 308
    GAT_SF; GAT domain found in eukaryotic ADP-ribosylation factor (Arf)-binding proteins (GGAs), metazoan myb protein 1 (Tom1)-like proteins, and similar proteins

  2. XM_021068017.1 → XP_020923676.1  TOM1-like protein 2 isoform X11

    UniProtKB/TrEMBL
    A0A8D1N1B3, A0A8D1QVT3
    Related
    ENSSSCP00000065200.1, ENSSSCT00000075874.1
    Conserved Domains (2) summary
    cl02544
    Location:12 → 123
    VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal ...
    cl03906
    Location:172 → 263
    GAT_SF; GAT domain found in eukaryotic ADP-ribosylation factor (Arf)-binding proteins (GGAs), metazoan myb protein 1 (Tom1)-like proteins, and similar proteins

  3. XM_021068006.1 → XP_020923665.1  TOM1-like protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A8D1B1K9, A0A8D1N319
    Conserved Domains (2) summary
    cd03565
    Location:12 → 152
    VHS_Tom1; VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of ...
    cl03906
    Location:217 → 308
    GAT_SF; GAT domain found in eukaryotic ADP-ribosylation factor (Arf)-binding proteins (GGAs), metazoan myb protein 1 (Tom1)-like proteins, and similar proteins

  4. XM_021068009.1 → XP_020923668.1  TOM1-like protein 2 isoform X4

    UniProtKB/TrEMBL
    A0A287BAN7, A0A8D1D4F9, A0A8D1N319
    Related
    ENSSSCP00000053129.1, ENSSSCT00000058737.3
    Conserved Domains (2) summary
    cd03565
    Location:12 → 152
    VHS_Tom1; VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of ...
    cl03906
    Location:217 → 308
    GAT_SF; GAT domain found in eukaryotic ADP-ribosylation factor (Arf)-binding proteins (GGAs), metazoan myb protein 1 (Tom1)-like proteins, and similar proteins

  5. XM_021068014.1 → XP_020923673.1  TOM1-like protein 2 isoform X9

    UniProtKB/TrEMBL
    A0A286ZMJ5, A0A8D0PL97, A0A8D1N1B3
    Related
    ENSSSCP00000032848.2, ENSSSCT00000044087.3
    Conserved Domains (2) summary
    cl02544
    Location:12 → 123
    VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal ...
    cl03906
    Location:172 → 263
    GAT_SF; GAT domain found in eukaryotic ADP-ribosylation factor (Arf)-binding proteins (GGAs), metazoan myb protein 1 (Tom1)-like proteins, and similar proteins

  6. XM_021068015.1 → XP_020923674.1  TOM1-like protein 2 isoform X10

    UniProtKB/TrEMBL
    A0A8D1EA25
    Conserved Domains (2) summary
    cl02544
    Location:1 → 85
    VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal ...
    cl03906
    Location:150 → 241
    GAT_SF; GAT domain found in eukaryotic ADP-ribosylation factor (Arf)-binding proteins (GGAs), metazoan myb protein 1 (Tom1)-like proteins, and similar proteins

  7. XM_021068012.1 → XP_020923671.1  TOM1-like protein 2 isoform X7

    UniProtKB/TrEMBL
    A0A8D1N319
    Conserved Domains (2) summary
    cl02544
    Location:1 → 119
    VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal ...
    cl03906
    Location:184 → 275
    GAT_SF; GAT domain found in eukaryotic ADP-ribosylation factor (Arf)-binding proteins (GGAs), metazoan myb protein 1 (Tom1)-like proteins, and similar proteins

  8. XM_021068011.1 → XP_020923670.1  TOM1-like protein 2 isoform X6

    UniProtKB/TrEMBL
    A0A8D1N1B3
    Conserved Domains (2) summary
    cl02544
    Location:34 → 139
    VHS_ENTH_ANTH; VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal ...
    cl03906
    Location:188 → 279
    GAT_SF; GAT domain found in eukaryotic ADP-ribosylation factor (Arf)-binding proteins (GGAs), metazoan myb protein 1 (Tom1)-like proteins, and similar proteins

  9. XM_021068005.1 → XP_020923664.1  TOM1-like protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8D1N2R5
    Conserved Domains (2) summary
    cd03565
    Location:34 → 168
    VHS_Tom1; VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of ...
    cl03906
    Location:233 → 324
    GAT_SF; GAT domain found in eukaryotic ADP-ribosylation factor (Arf)-binding proteins (GGAs), metazoan myb protein 1 (Tom1)-like proteins, and similar proteins

  10. XM_021068010.1 → XP_020923669.1  TOM1-like protein 2 isoform X5

    UniProtKB/TrEMBL
    A0A8D0UM03, A0A8D1N2R5
    Conserved Domains (2) summary
    cd03565
    Location:34 → 168
    VHS_Tom1; VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of ...
    cl03906
    Location:233 → 324
    GAT_SF; GAT domain found in eukaryotic ADP-ribosylation factor (Arf)-binding proteins (GGAs), metazoan myb protein 1 (Tom1)-like proteins, and similar proteins

  11. XM_021068008.1 → XP_020923667.1  TOM1-like protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A8D1N2R5
    Conserved Domains (2) summary
    cd03565
    Location:34 → 168
    VHS_Tom1; VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of ...
    cl03906
    Location:233 → 324
    GAT_SF; GAT domain found in eukaryotic ADP-ribosylation factor (Arf)-binding proteins (GGAs), metazoan myb protein 1 (Tom1)-like proteins, and similar proteins

RNA

  1. XR_002337411.1 RNA Sequence

  2. XR_002337412.1 RNA Sequence

  3. XR_002337408.1 RNA Sequence

  4. XR_002337409.1 RNA Sequence

  5. XR_002337410.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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