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RNU2-11P RNA, U2 small nuclear 11, pseudogene [ Homo sapiens (human) ]

Gene ID: 106481637, updated on 10-Dec-2024

Summary

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Official Symbol
RNU2-11Pprovided by HGNC
Official Full Name
RNA, U2 small nuclear 11, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:48504
See related
Ensembl:ENSG00000239122 AllianceGenome:HGNC:48504
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See RNU2-11P in Genome Data Viewer
Location:
3q29
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (195928589..195928775, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (198429251..198429437)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (195655460..195655646, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene tyrosine kinase non receptor 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:195610157-195610657 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:195613501-195614264 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:195615031-195615794 Neighboring gene microRNA 6829 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15041 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15042 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21059 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:195623973-195624772 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:195625602-195626282 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21060 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21061 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21062 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15043 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15044 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15045 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21063 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:195641665-195642277 Neighboring gene TNK2 antisense RNA 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:195652784-195653752 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:195653753-195654721 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:195654722-195655690 Neighboring gene mucin-5AC-like Neighboring gene serine/threonine-protein phosphatase 4 regulatory subunit 2-like Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:195666797-195667467 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:195667468-195668137 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15047 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:195682291-195682942 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21064 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15048 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:195694102-195694602 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:195694603-195695103 Neighboring gene SDHA pseudogene 1 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:195698692-195698924 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15049 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15050

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Pathways from PubChem

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General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_044723.1 

    Range
    101..287
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    195928589..195928775 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    198429251..198429437
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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