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RN7SKP45 RN7SK pseudogene 45 [ Homo sapiens (human) ]

Gene ID: 106479115, updated on 10-Dec-2024

Summary

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Official Symbol
RN7SKP45provided by HGNC
Official Full Name
RN7SK pseudogene 45provided by HGNC
Primary source
HGNC:HGNC:45769
See related
AllianceGenome:HGNC:45769
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See RN7SKP45 in Genome Data Viewer
Location:
3p14.3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (56072104..56072341)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (56112486..56112723)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (56106132..56106369)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene ELKS/RAB6-interacting/CAST family member 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19977 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19978 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:55698537-55699037 Neighboring gene ERC2 intronic transcript 1 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr3:55865502-55866002 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr3:55866003-55866503 Neighboring gene NANOG hESC enhancer GRCh37_chr3:55922467-55922978 Neighboring gene microRNA 3938 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:56045180-56045364 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:56116766-56116940 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:56144795-56145606 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:56145607-56146417 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:56149711-56150211 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:56157494-56158036 Neighboring gene RNA, 5S ribosomal pseudogene 133 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:56288084-56288696 Neighboring gene NANOG hESC enhancer GRCh37_chr3:56469501-56470002 Neighboring gene uncharacterized LOC105377099

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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Other Names

  • RNA, 7SK small nuclear pseudogene 45

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_042987.1 

    Range
    101..338
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    56072104..56072341
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    56112486..56112723
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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