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RNY3P1 RNY3 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 106478984, updated on 4-Mar-2025

Summary

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Official Symbol
RNY3P1provided by HGNC
Official Full Name
RNY3 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:42477
See related
Ensembl:ENSG00000201955 AllianceGenome:HGNC:42477
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See RNY3P1 in Genome Data Viewer
Location:
5q14.1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (79170235..79170334, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (79653850..79653949, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (78466058..78466157, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene betaine--homocysteine S-methyltransferase 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:78407958-78408802 Neighboring gene uncharacterized LOC124901012 Neighboring gene betaine--homocysteine S-methyltransferase Neighboring gene uncharacterized LOC124901011 Neighboring gene small nucleolar RNA SNORA18 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22721 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16128 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16129 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:78532408-78533044 Neighboring gene Sharpr-MPRA regulatory region 9907 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:78551199-78551987 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:78553931-78554592 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:78555253-78555912 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:78557127-78557664 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr5:78557665-78558202 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22723 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:78559614-78560138 Neighboring gene junction mediating and regulatory protein, p53 cofactor Neighboring gene RPS3A pseudogene 20

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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Other Names

  • RNA, Ro-associated Y3 pseudogene 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_043975.1 

    Range
    101..200
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    79170235..79170334 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    79653850..79653949 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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